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DrugRepo: A novel approach to repurpose a huge collection of compounds based on chemical and genomic features
Authors: Yinyin Wang, Jehad Aldahdooh, Hongbin Yang, Jing Tang, Ziaurrehman Tanoli
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Using BERT to identify drug-target interactions from whole
PubMed
Authors: Jehad Aldahdooh, Markus Vähä-Koskela, Jing Tang, Ziaurrehman Tanoli
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Computational drug repurposing: progress and evaluation of in silico resources, Journal of Nature Reviews Drug Discovery, 2024
Author: Ziaurrehman Tanoli, Adrià Fernández-Torras et al.
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Attention-based method to predict drug-target interactions across seven protein superfamilies, journal of Bioinformatics, 2024
Author: Aron Schulman, Juho Rousu, Tero Aittokallio, Ziaurrehman Tanoli
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RepurposeDrugs: an interactive web-portal and predictive platform for repurposing mono- and combination therapies, Briefings in Bioinformatics, 2024
Author: Aleksandr Ianevski, Aleksandr Kushnir, Kristen Nader, Mitro Miihkinen, Henri Xhaard, Tero Aittokallio, Ziaurrehman Tanoli
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Artificial intelligence in clinical trials: from protocol design to pharmacovigilance”, book chapter in Nature springer (in press), 2025
Author: Aron Schulman, Adrià Fernández-Torras, Yojana Gadiya, Khalid Saeed, Jordi Mestres, Ziaurrehman Tanoli
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Computational evaluation of virtual screening-based methods, Expert Opinion on Drug discovery, 2025
Author: Ziaurrehman Tanoli, Aron Schulman, Tero Aittokallio
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Mining drug-target interactions from biomedical literature using chemical and gene descriptions-based ensemble transformer model, Journal of Bioinformatics Advances, 2024
Author: Jehad Aldahdooh, Ziaurrehman Tanoli, Jing Tang
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Machine Learning and Artificial Intelligence in drug repurposing – challenges and perspectives, Drug Repurposing, 2024
Author: Ezequiel Anokian, Judith Bernett, Adrian Freeman, Markus List, Lucía Prieto Santamaría, Ziaurrehman Tanoli, Sarah Bonnin
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PGxDB: An interactive web-platform for pharmacogenomics research”, Journal of Nucleic Acids Research, 2025
Author: Duong Nguyen Trinh Trung, Ziaurrehman Tanoli, Saad Hassan, Umut Özcan, Jimmy Caroli, Albert Kooistra, David Gloriam, Alexander Hauser
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Data-driven strategies for drug repurposing, biorxiv (under review at Briefings in Bioinformatics), 2025
Author: Susanna Savander, Nurettin Nusret Curabaz, Asifullah Khan, Khalid Saeed, Ziaurrehman Tanoli
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RNA-BERTa: A transformer approach for RNA-drug binding affinity prediction, Bioinformatics, 2025
Author: Pasquale Lobascio, Khalid Saeed, Ziaurrehman Tanoli
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